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  • znasim09
    Member
    • Sep 2015
    • 23

    #1

    Error in (Gviz) genetrack<-makeGeneRegionTrack(myGene)

    Hi,
    I am unable to use the Gviz genetrack. When i try, it gives me the error (Error in grid.Call.graphics(L_setviewport, vp, TRUE) :
    non-finite location and/or size for viewport)

    Details are here:

    > myGene<-getGene(cuff_data,myGeneId)
    > head(features(myGene))
    seqnames start end width strand source type score phase gene_id gene_version gene_name gene_source
    1 4 11008666 11013860 5195 + ensembl gene NA NA AT4G20400 1 JMJ14 ensembl
    2 4 11008666 11013842 5177 + ensembl transcript NA NA AT4G20400 1 JMJ14 ensembl
    3 4 11008666 11008818 153 + ensembl exon NA NA AT4G20400 1 JMJ14 ensembl
    4 4 11008957 11009045 89 + ensembl exon NA NA AT4G20400 1 JMJ14 ensembl
    5 4 11009004 11009045 42 + ensembl CDS NA 0 AT4G20400 1 JMJ14 ensembl
    6 4 11009004 11009006 3 + ensembl start_codon NA 0 AT4G20400 1 JMJ14 ensembl
    gene_biotype isoform_id transcript_version transcript_name transcript_source transcript_biotype exon_number
    1 protein_coding <NA> NA <NA> <NA> <NA> NA
    2 protein_coding AT4G20400.1 1 JMJ14 ensembl protein_coding NA
    3 protein_coding AT4G20400.1 1 JMJ14 ensembl protein_coding 1
    4 protein_coding AT4G20400.1 1 JMJ14 ensembl protein_coding 2
    5 protein_coding AT4G20400.1 1 JMJ14 ensembl protein_coding 2
    6 protein_coding AT4G20400.1 1 JMJ14 ensembl protein_coding 2
    exon_id exon_version protein_id protein_version
    1 <NA> NA <NA> NA
    2 <NA> NA <NA> NA
    3 AT4G20400.1.exon1 1 <NA> NA
    4 AT4G20400.1.exon2 1 <NA> NA
    5 <NA> NA AT4G20400.1 1
    6 <NA> NA <NA> NA
    > genetrack<-makeGeneRegionTrack(myGene)
    > plotTracks(genetrack)

    Error in grid.Call.graphics(L_setviewport, vp, TRUE) :
    non-finite location and/or size for viewport


    Has any one faced the same problem??
    Thanks

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