I calculated the RPKM based on my RNA-seq data. I am trying to cluster the data and explain the gene expression through a time series (along which my samples are taken).
Could anybody recommend some good method to do so?
I am thinking to log-transform the RPKM data, and then make a heatmap graphs like what we usually do for microarray data. What do you guys think about this?
Thanks
Could anybody recommend some good method to do so?
I am thinking to log-transform the RPKM data, and then make a heatmap graphs like what we usually do for microarray data. What do you guys think about this?
Thanks
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