Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • yaseen.ladak
    Junior Member
    • Nov 2013
    • 7

    #1

    How can Cuffnorm output give gene names in addition to gene id from input GTF file

    Hi All,

    I need a little help, the output of cuffnorm from the genes.fpkm_table file is as follows:

    tracking_id q1_0 q2_0
    ECDH10B_0001 0 0
    ECDH10B_0002 12.7841 26.1493
    ECDH10B_0003 20.8691 21.9675
    ECDH10B_0004 25.1604 47.0917

    How can I include the gene name in the output file in addition to the gene id which is also present in the input GTF file that I am using from ensembl. I am not discovering any new novel transcripts.

    Can any one please help.

    Thank you
    Yaseen
  • fanli
    Senior Member
    • Jul 2014
    • 197

    #2
    Cross-posted with https://www.biostars.org/p/190114/#190158

    Comment

    Latest Articles

    Collapse

    • SEQadmin2
      16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
      by SEQadmin2




      NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...
      Today, 06:46 AM
    • SEQadmin2
      Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
      by SEQadmin2



      Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

      Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
      ...
      10-14-2026, 09:55 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by SEQadmin2, 10-28-2026, 09:57 AM
    0 responses
    22 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-28-2026, 09:51 AM
    0 responses
    14 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-22-2026, 11:13 AM
    0 responses
    67 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-22-2026, 10:48 AM
    0 responses
    47 views
    0 reactions
    Last Post SEQadmin2  
    Working...