Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • RNA-Seq to gene expression

    What is the fastest way to get from RNA-Seq experiment to gene names and RPKM values? I have analyzed an experiment with Tophat and Cufflinks, but this seems to produce genome locations and FPKM. I'm wondering where to go from here.

  • #2
    You can run cufflinks against the annotation. And it will be quite fast

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Recent Developments in Metagenomics
      by seqadmin





      Metagenomics has improved the way researchers study microorganisms across diverse environments. Historically, studying microorganisms relied on culturing them in the lab, a method that limits the investigation of many species since most are unculturable1. Metagenomics overcomes these issues by allowing the study of microorganisms regardless of their ability to be cultured or the environments they inhabit. Over time, the field has evolved, especially with the advent...
      09-23-2024, 06:35 AM
    • seqadmin
      Understanding Genetic Influence on Infectious Disease
      by seqadmin




      During the COVID-19 pandemic, scientists observed that while some individuals experienced severe illness when infected with SARS-CoV-2, others were barely affected. These disparities left researchers and clinicians wondering what causes the wide variations in response to viral infections and what role genetics plays.

      Jean-Laurent Casanova, M.D., Ph.D., Professor at Rockefeller University, is a leading expert in this crossover between genetics and infectious...
      09-09-2024, 10:59 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, Yesterday, 04:51 AM
    0 responses
    8 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 10-01-2024, 07:10 AM
    0 responses
    11 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 09-30-2024, 08:33 AM
    0 responses
    16 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 09-26-2024, 12:57 PM
    0 responses
    16 views
    0 likes
    Last Post seqadmin  
    Working...
    X