can anyone help me identify if the strand info is in the accepted.sam file (tophat output)
SOLEXA1_0001:1:60:7595:15462#0 16 chr1 3000555 255 36M * 0 0 AATTTGTTTTGTCCTTCAGCGGATTAAAATATTCAG CBBBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NM:i:0
or does anyone know what is column 2 and 4 means. I checked sam manual but still confused. Thanks.
SOLEXA1_0001:1:60:7595:15462#0 16 chr1 3000555 255 36M * 0 0 AATTTGTTTTGTCCTTCAGCGGATTAAAATATTCAG CBBBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NM:i:0
or does anyone know what is column 2 and 4 means. I checked sam manual but still confused. Thanks.
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