Hi all,
I have used edgeR to analyse my Illumina RNAseq data. It generally works fine and I get biologically meaningfull DGE results.
I appreciate that plotSmear() is able to visualize the tags with no counts in one of the libraries. I am unsure however, as to what value is used to plot these tags on the logFC-Axis.
I have not been able to find this in the edgeR-manual or Mark Robinson's /Davis McCarthy's paper. Any ideas on this would be appreciated!
Best,
martin
I have used edgeR to analyse my Illumina RNAseq data. It generally works fine and I get biologically meaningfull DGE results.
I appreciate that plotSmear() is able to visualize the tags with no counts in one of the libraries. I am unsure however, as to what value is used to plot these tags on the logFC-Axis.
I have not been able to find this in the edgeR-manual or Mark Robinson's /Davis McCarthy's paper. Any ideas on this would be appreciated!
Best,
martin
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