Unconfigured Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • Aishah
    Junior Member
    • Aug 2019
    • 3

    RNA-seq data QC

    Regarding trimming of raw RNA-seq datasets, do we need to trim off primer sequences despite FASTQC not indicating these as overrepresented?
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    I assume you are referring to adapter sequences. Strictly speaking you don't need to since most modern aligners will soft clip them.

    That said, it can be a good practice to scan and trim your data so you can be sure that there is no extraneous sequence present.

    Comment

    Latest Articles

    Collapse

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by SEQadmin2, Today, 11:58 AM
    0 responses
    9 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 06-05-2026, 10:09 AM
    0 responses
    25 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 06-04-2026, 08:59 AM
    0 responses
    34 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 06-02-2026, 12:03 PM
    0 responses
    56 views
    0 reactions
    Last Post SEQadmin2  
    Working...