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  • download set of genes??

    Hi,
    I like to know how can download set of genes (annotated introns)(bed file format) of pig either from UCSC or Ensembl.Thanks in advance.

  • #2
    Try the UCSC table browser, it can give bed output

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    • #3
      Hi
      Thanks for your response but my problem is in choosing track,group and table in this link that you introduced.also after enter get output, in the second page has different option. For my interest which of option should I use?Thanks

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      • #4
        group: Genes and gene predictions
        table: ensGene
        track: Ensembl
        output format: BED

        next page, choose Whole gene

        this will give you the ensembl gene annotation for pig in 12-column bed format

        choose Introns on 2nd page if you want a one line per intron instead

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