Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • BlendSkill
    Junior Member
    • Mar 2020
    • 2

    #1

    Indeterminate nucleotides ?

    Hello !
    I am a French student and I am very interested in DNA sequencing.
    I downloaded the sequenced human genome (in Fasta format) from the "U.S. National Library of Medicine" to study it.
    Approximately 7% of the nucleotides are replaced by the letter N, which means that it's Adenine, Cytosine, Guanine OR Thymine, so it's indeterminate.

    Could someone explain to me how it's possible to have indeterminate nucleotides?
    Nobody answered me on the French forums or on the less specific American forums.

    Thank you in advance
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    Rather then indeterminate, N signifies that a reliable base call is not possible at that location.

    N's are also included to indicate locations where current sequencing technologies are unable to sequence DNA (think of telomeres, centromeres etc which may have homopolymeric/repeat stretches). So we know there is DNA there but don't know the actual sequence. So keep the length of the chromosome roughly the same as what we expect N's are padded to the sequence.

    Comment

    • BlendSkill
      Junior Member
      • Mar 2020
      • 2

      #3
      Thank you very much !

      Comment

      Latest Articles

      Collapse

      • SEQadmin2
        Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
        by SEQadmin2



        Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

        Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
        ...
        10-14-2026, 09:55 AM
      • SEQadmin2
        New Genomics Technologies Take Aim at Long-Standing Limits
        by SEQadmin2


        Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

        We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
        ...
        09-28-2026, 10:25 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 10-22-2026, 11:13 AM
      0 responses
      26 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-22-2026, 10:48 AM
      0 responses
      20 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-15-2026, 10:52 AM
      0 responses
      36 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-14-2026, 05:39 AM
      0 responses
      43 views
      0 reactions
      Last Post SEQadmin2  
      Working...