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In Galaxy, I've been attempting to run htseq-count on BAM files created in hisat2, and I keep getting this error:
[bam_sort_core] merging from 36 files and 1 in-memory blocks...
Error occured when processing GFF file (line 16 of file /galaxy-repl/main/files/042/181/dataset_42181741.dat):
Failure parsing GFF attribute line
[Exception type: ValueError, raised in __init__.py:175]
I've attached a screenshot of my GFF file. I recognize that this issue is a result of the ID attribute, and in a GFF3 file, it would have ID=x. Is there a way to indicate an ID attribute in Galaxy with this file so it can run properly?
[bam_sort_core] merging from 36 files and 1 in-memory blocks...
Error occured when processing GFF file (line 16 of file /galaxy-repl/main/files/042/181/dataset_42181741.dat):
Failure parsing GFF attribute line
[Exception type: ValueError, raised in __init__.py:175]
I've attached a screenshot of my GFF file. I recognize that this issue is a result of the ID attribute, and in a GFF3 file, it would have ID=x. Is there a way to indicate an ID attribute in Galaxy with this file so it can run properly?