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  • tangx_2010
    Junior Member
    • Mar 2011
    • 5
    #1

    sam format version in tophat output

    Hi，
    Tophat calls samtools when it outputs alignments. The version of samtool in my machine is 0.1.13(r926:134), which is newly developed . However, the sam format version indicated in the header of tophat *.bam result shows VN:1.0, which is very old. I don't know why.
    Tags: None
  • nilshomer
    Nils Homer
    • Nov 2008
    • 1283
    #2
    The "VN:1.0" is not the samtools version, but the SAM specification version. Samtools 0.1.13 reports that it still confirms with spec 1.0 and onwards.

    Comment

    • tangx_2010
      Junior Member
      • Mar 2011
      • 5
      #3
      Thank you very much! This really helped me a lot.

      Comment

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