Hi,
Is there a GTF file for maize? I know a GFF file exists but I'm using Cufflinks and need the GTF.
Thanks,
Ann
Is there a GTF file for maize? I know a GFF file exists but I'm using Cufflinks and need the GTF.
Thanks,
Ann
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Thanks for the link however the file only seems to contain entries for chromosome 9...Comment
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Has anyone been able to locate a maize GTF file or create one from the GFF file from the Filtered Gene Set (http://ftp.maizesequence.org/current/filtered-set/)? Would be very useful.
To convert a GFF into a GTF, it looks like it's just a matter of re-formatting, but I'm unclear as to how to do that.Comment
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When we mentioned the 'chromosome 9' only problem to Ensembl they basically said "oops, will be corrected in the next release." Which was suppose to be today and, yes, I just checked, was today. See:
ftp://ftp.ensemblgenomes.org/pub/release-9/plants/gtf/
I haven't actually looked the maize GTF in detail yet -- that is now on my 'to do' list for the day -- but they do have entries for all 10 chromosomes.Comment
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Oh, and in response to the comment
Yeah, it looks like that. Harder to do than to say, though. Speaking from experience.To convert a GFF into a GTF, it looks like it's just a matter of re-formatting,Comment
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