Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Nextera XT low complexity pooling, V3 reagent kit

    A couple questions about the Nextera XT kit. The protocol is written as if you are using amplicons.

    1. What is the size distribution of fragments post tagmentation assuming loading 1ng of gDNA (metagenome)?

    2. What is the binding capacity of the normalization beads?

    3. If pooling 1-3 libraries how much of each should be added the HT1 buffer. I was told by tech support to load only 5ul of ea library, bring up the volume of HT1 to 600ul. This doesn't seem right to me. Protocol states 5ul of ea library pooled, 24ul of this into 576 HT1 to maintain 1:25 dilution.

  • #2
    1- Tagmented fragments size using XT kit for good quality high molecular weight DNA is 100-2000 bp. Completed libraries sizes varies from 300 bp above depending on ratio of beads used for clean-up.
    2- Illumina does not reveal that.
    3- We stop after cleaning PCR and follow standard protocols for sequencing which is QPCR quantification, pooling and sequencing. Using normaliser beads gives unreliable results.

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Understanding Genetic Influence on Infectious Disease
      by seqadmin




      During the COVID-19 pandemic, scientists observed that while some individuals experienced severe illness when infected with SARS-CoV-2, others were barely affected. These disparities left researchers and clinicians wondering what causes the wide variations in response to viral infections and what role genetics plays.

      Jean-Laurent Casanova, M.D., Ph.D., Professor at Rockefeller University, is a leading expert in this crossover between genetics and infectious...
      Yesterday, 10:59 AM
    • seqadmin
      Addressing Off-Target Effects in CRISPR Technologies
      by seqadmin






      The first FDA-approved CRISPR-based therapy marked the transition of therapeutic gene editing from a dream to reality1. CRISPR technologies have streamlined gene editing, and CRISPR screens have become an important approach for identifying genes involved in disease processes2. This technique introduces targeted mutations across numerous genes, enabling large-scale identification of gene functions, interactions, and pathways3. Identifying the full range...
      08-27-2024, 04:44 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 09-06-2024, 08:02 AM
    0 responses
    138 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 09-03-2024, 08:30 AM
    0 responses
    141 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 08-27-2024, 04:40 AM
    0 responses
    152 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 08-22-2024, 05:00 AM
    0 responses
    395 views
    0 likes
    Last Post seqadmin  
    Working...
    X