– 1/ CuratedAtlasQueryR is a query interface that allows the programmatic exploration and retrieval of the harmonized, curated and reannotated CELLxGENE single-cell human cell atlas. Data can be retrieved at cell, sample, or dataset levels based on filtering criteria.
– 2/ Hallmarks of transcriptional intratumour heterogeneity across a thousand tumours pubmed.ncbi.nlm.nih.gov/37258682/ weizmann.ac.il/sites/3CA/
– 3/ Meta-Analysis of Human Cancer Single-Cell RNA-Seq Datasets Using the IMMUcan Database https://aacrjournals.org/cancerres/a...e-Cell-RNA-Seq
– 4/ Deeply Integrated human Single-Cell Omics data DISCO immunesinglecell.org/atlasList
– 5/ (PanglaoDB)[panglaodb.se) is a database for the scientific community interested in exploration of single cell RNA sequencing experiments from mouse and human. We collect and integrate data from multiple studies and present them through a unified framework.
– 6/ Tumor Immune Single-cell Hub TISCH2 tisch.comp-genomics.org
– 7/ Cancer Single cell Expression Map ngdc.cncb.ac.cn/cancerscem/
– 8/ Swiss Portal for Immune Cell Analysis SPICA spica.unil.ch
– 9/ scRNASeqDB database, which contains 36 human single cell gene expression data sets collected from Gene Expression Omnibus (GEO)
– 10/ JingleBellA repository of standardized single cell RNA-Seq datasets for analysis and visualization at the single cell level.
– 11/ Broad single cell portal
– 12/ The conquer (consistent quantification of external rna-seq data) repository is developed by Charlotte Soneson and Mark D Robinson at the University of Zurich, Switzerland. It is implemented in shiny and provides access to consistently processed public single-cell RNA-seq data sets.
– 13/ A curated database reveals trends in single-cell transcriptomics https://www.biorxiv.org/content/10.1101/742304v2human cell atlas database
– 14/ Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR sequencing data from Nick Borcherding
– 15/ ASAP asap.epfl.ch
– 16/ humantumoratlas.org/explore
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Happy Learning!
Tommy