Has anybody gotten this to work using windows? If not, are there any ways to convert sra to fastq for someone on a windows OS? It seems that Galaxy has nothing regarding sra file formats.
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I think I got it
I went back to NCBI website and found a ncbi sra toolkit designed for 32 bit windows os. It seems to be working now. -
Use SRA to do conversion?
A few months ago Stephen Taylor suggested using the SRA's conversion itself:
The way I got round this was let the SRA website do the conversion. So just paste in the URL in the upload screen:
Where SRRXXXXXX is the archive of interest, and it downloads Sanger FASTQ sequences to Galaxy.
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