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I have download the source code of the ALLPATHS from the MIT. But I can not find any information about how to compile or install. Where can I get the information about how to install and use?
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The manual seems to be a separate download to the .tgz package:
ftp://ftp.broad.mit.edu/pub/crd/ALLP....0.manual.docx -
/usr/lib/gcc/x86_64-redhat-linux/4.3.2/../../../../include/c++/4.3.2/backward/auto_ptr.h:196
./kmer_freq/EvaluateStrongKmers.cc:302:
when I compile the software, it report a bug. The above files seem to be something wrong.Comment
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I think I solve the problem after I change the system language from Chinese to English.Comment
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Hi anyone1985Originally posted by anyone1985 View Post
Are you running AllPaths? Does it work? What version are you using? I tried with version 3.3.2 and i always get error that says -
Looks like the command PrepareAllPathsInput did not complete
Did you get this error?
What command do you give for TARGET=import and TARGET=Standard
thanks in advance
himalayaComment
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Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
...06-02-2026, 10:05 AM -
With the launch of new single-cell sequencing platforms in 2026, the field stands at an exciting inflection point. This article surveys the most impactful advances in the field and discusses how they’re reshaping research in cancer, immunology, and beyond.
Introduction
Single-cell sequencing technologies have undergone remarkable advances over the past decade, transitioning from low-throughput experimental approaches to highly scalable platforms capable of...05-22-2026, 06:42 AM
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