Error Message for read length

[cjose]

Getting this error:
Parameter read.length=35 does not agree with read file sequence length=50

I changed the read.length back to 50, but then it says the opposite:
"does not agree with read file sequence length=35"

Here is my ini file:

import global/global.ini
run_name = arupaRun1
sample_name = arupaSample1

reference = ${reference.dir}/ch11_12_validated.fasta
read.length = 35

mapping.run = 1
mapping.tagfiles.dir = ${reads.result.dir.1}
mapping.output.dir = ${output.dir}/chr
mismatch.level = 2

Any suggestions?

[nilshomer]

What software? What was your command? Do you have a test case?

[cjose]

I am running bioscope. I used 2 different ini files for two csfasta/qual reads. I keep getting this error. I have no test case. First time running bioscope.

[cjose]

its a 50bp x 35bp paired-end if that helps