A question about install RSEQtools

[louis7781x]

Hi everyone,

I am interesting in RSEQtools,but I have some problem while install.

In the begin,I have already installed gsl,and I download source code RSEQtools-0.6.tar.gz

After I set environment variables,I cd to bios and keyin make,but show error as following:

Makefile:6: /usr/local/bin//biosdefs.make: No such file or directory
make: *** No rule to make target `/usr/local/bin//biosdefs.make'. Stop.


My problem is I can't find biosdefs.make in my gsl,I think gsl 's version I installed is different as official.

But I don't which version is official usage?

Thanks!!!!!!

Best Regard!

[bharati]

I am unable to use sam2mrf provided by prebuilt binaries of RSEQtools, can anybody pls help?
The command I tried was "sort -r file.sam | sam2mrf > file.mrf"
as specified in the manual for the alignment file generated by tophat but it didnt work.

please reply soon.

[StochasticGr8ness]

Hi,

I had the same problem until I realized that I had to export the path variables from my bash.

Previous .BASHRC settings:
#RSEQtools
BIOINFOCONFDIR=~/Programs/RSEQtools/bios/conf
BIOINFOGSLDIR=~/Programs/gsl-2.4


Changed to:
#RSEQtools
export BIOINFOCONFDIR=~/Programs/RSEQtools/bios/conf
export BIOINFOGSLDIR=~/Programs/gsl-2.4

[I]Settings were saved[\I]

source ~/.bashrc
make