GO-slim Problem When Run Blast2GO, Help.

byou678

Member

Join Date: Aug 2011

Posts: 52
- Share
- Tweet
#1

GO-slim Problem When Run Blast2GO, Help.

09-01-2011, 01:32 PM

Hi All,

I load 10 example sequences into Blast2GO by choosing "Load 10
Example Sequences" in the "File" menu. I run blast, mapping, annotation step by step, after doing the annotation augmentation by "Run ANNEX", I try to do " GO-Slim", it shows:
10:24 Prepare data for GoSlim.
10:24 6 Sequences send to preform GoSlim: goslim_generic.obo Error while generating GoSlim results: Error: SOAP message MUST NOT contain a Document Type Declaration(DTD); nested exception is:
org.apache.axiom.om.OMException: SOAP message MUST NOT contain a Document Type Declaration(DTD)

In addition, I download the example file ( b2g_example_file.zip) from Blast2GO Home Site, and use that data to run, the same problem occur:

16:52 Prepare data for GoSlim.
16:52 928 Sequences send to preform GoSlim: goslim_generic.obo Error while generating GoSlim results: Error: SOAP message MUST NOT contain a Document Type Declaration(DTD); nested exception is:
org.apache.axiom.om.OMException: SOAP message MUST NOT contain a Document Type Declaration(DTD)

Does anyone have the similar problem before?

One more problem: When I right click one sequence to run " Draw Graph of Annotation", The graph should appear under "Go Graphs" of the Result Tabs. But it doesn't happen, only show me a " Graph-Sequence Distribution" Table under " Statistics" of the Result Tabs.

ANY Ideas and Helps will be greatly appreciated. Look forward to the responses. Thanks All.

Last edited by byou678; 09-11-2011, 07:40 AM.
Tags: blast2go, go slim

Previous template Next

From Collection to Sequencing: Why Sample Preparation and Preservation Define Sequencing Data

by SEQadmin2

Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.

The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
...
- Channel: Articles
06-02-2026, 10:05 AM
Single-Cell Sequencing at an Inflection Point: Early Impacts of New Platforms and Emerging Trends

by SEQadmin2

With the launch of new single-cell sequencing platforms in 2026, the field stands at an exciting inflection point. This article surveys the most impactful advances in the field and discusses how they’re reshaping research in cancer, immunology, and beyond.

Introduction

Single-cell sequencing technologies have undergone remarkable advances over the past decade, transitioning from low-throughput experimental approaches to highly scalable platforms capable of...
- Channel: Articles
05-22-2026, 06:42 AM

Topics	Statistics	Last Post
A New Method Makes Hantavirus Genome Analysis Faster and More Accessible by SEQadmin2 Started by SEQadmin2, Today, 10:09 AM	0 responses 9 views 0 reactions	Last Post by SEQadmin2 Today, 10:09 AM
A New Single-Cell Method Maps DNA-Protein Interactions by SEQadmin2 Started by SEQadmin2, Yesterday, 08:59 AM	0 responses 16 views 0 reactions	Last Post by SEQadmin2 Yesterday, 08:59 AM
Long-Read RNA Sequencing Uncovers a Hidden Layer of Immune Cell Regulation by SEQadmin2 Started by SEQadmin2, 06-02-2026, 12:03 PM	0 responses 24 views 0 reactions	Last Post by SEQadmin2 06-02-2026, 12:03 PM
DNA Methylation Study Reveals How Epigenetic Changes Pass Between Generations by SEQadmin2 Started by SEQadmin2, 06-02-2026, 11:40 AM	0 responses 21 views 0 reactions	Last Post by SEQadmin2 06-02-2026, 11:40 AM

Unconfigured Ad

GO-slim Problem When Run Blast2GO, Help.

Latest Articles

ad_right_rmr

News