Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Could GSNAP results be analyzed by Cufflinks?

    Hi.

    Could the alignments of GSNAP be analyzed by Cufflinks?

    Thanks very much!

  • #2
    gsnap cufflinks

    yes.

    Export as SAM and sort the SAM file appropriately

    Comment


    • #3
      Originally posted by aquleaf View Post
      Hi.

      Could the alignments of GSNAP be analyzed by Cufflinks?

      Thanks very much!
      Hi Aquleaf,
      Did you get results from GSNPA+Cufflinks? I tried but a lot of genes were missed in cufflinks's assembly. Please see my post http://seqanswers.com/forums/showpos...39&postcount=8


      Mark

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Advanced Methods for the Detection of Infectious Disease
        by seqadmin




        The recent pandemic caused worldwide health, economic, and social disruptions with its reverberations still felt today. A key takeaway from this event is the need for accurate and accessible tools for detecting and tracking infectious diseases. Timely identification is essential for early intervention, managing outbreaks, and preventing their spread. This article reviews several valuable tools employed in the detection and surveillance of infectious diseases.
        ...
        11-27-2023, 01:15 PM
      • seqadmin
        Strategies for Investigating the Microbiome
        by seqadmin




        Microbiome research has led to the discovery of important connections to human and environmental health. Sequencing has become a core investigational tool in microbiome research, a subject that we covered during a recent webinar. Our expert speakers shared a number of advancements including improved experimental workflows, research involving transmission dynamics, and invaluable analysis resources. This article recaps their informative presentations, offering insights...
        11-09-2023, 07:02 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Yesterday, 08:23 AM
      0 responses
      8 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 12-01-2023, 09:55 AM
      0 responses
      21 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 11-30-2023, 10:48 AM
      0 responses
      20 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 11-29-2023, 08:26 AM
      0 responses
      15 views
      0 likes
      Last Post seqadmin  
      Working...
      X