Could GSNAP results be analyzed by Cufflinks?
Hi.
Could the alignments of GSNAP be analyzed by Cufflinks?
Thanks very much!
Could the alignments of GSNAP be analyzed by Cufflinks?
Thanks very much!
-
-
gsnap cufflinks
yes.
Export as SAM and sort the SAM file appropriately -
Hi Aquleaf,Originally posted by aquleaf View Post
Did you get results from GSNPA+Cufflinks? I tried but a lot of genes were missed in cufflinks's assembly. Please see my post http://seqanswers.com/forums/showpos...39&postcount=8
MarkComment
-
NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...Today, 06:46 AM -
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM
Comment