Hi everyone,
I'm trying to run Trimmomatic v0.15. I'm working with Illumina paired end data. With this command:
java -classpath ./trimmomatic.jar org.usadellab.trimmomatic.TrimmomaticSE initial_test_set1 out_file ILLUMINACLIP:illuminaClipping.fa:2:40:15 MINLEN:36
(all file for sure exist in the corresponding folders)
I get the following error:
=========================
Exception in thread "main" java.lang.NoClassDefFoundError: org/usadellab/trimmomatic/TrimmomaticSE
Caused by: java.lang.ClassNotFoundException: org.usadellab.trimmomatic.TrimmomaticSE
at java.net.URLClassLoader$1.run(URLClassLoader.java:217)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:205)
at java.lang.ClassLoader.loadClass(ClassLoader.java:321)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:294)
at java.lang.ClassLoader.loadClass(ClassLoader.java:266)
Could not find the main class: org.usadellab.trimmomatic.TrimmomaticSE. Program will exit.
=========================
Does anyone now how to solve it?
Thanks in advance,
Irina
I'm trying to run Trimmomatic v0.15. I'm working with Illumina paired end data. With this command:
java -classpath ./trimmomatic.jar org.usadellab.trimmomatic.TrimmomaticSE initial_test_set1 out_file ILLUMINACLIP:illuminaClipping.fa:2:40:15 MINLEN:36
(all file for sure exist in the corresponding folders)
I get the following error:
=========================
Exception in thread "main" java.lang.NoClassDefFoundError: org/usadellab/trimmomatic/TrimmomaticSE
Caused by: java.lang.ClassNotFoundException: org.usadellab.trimmomatic.TrimmomaticSE
at java.net.URLClassLoader$1.run(URLClassLoader.java:217)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:205)
at java.lang.ClassLoader.loadClass(ClassLoader.java:321)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:294)
at java.lang.ClassLoader.loadClass(ClassLoader.java:266)
Could not find the main class: org.usadellab.trimmomatic.TrimmomaticSE. Program will exit.
=========================
Does anyone now how to solve it?
Thanks in advance,
Irina
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