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  • nilshomer
    replied
    No I don't have an idea.

    Leave a comment:


  • adaptivegenome
    replied
    Thanks Nils. Do you by chance have any knowledge of the speed difference? Are they roughly the same?

    Leave a comment:


  • nilshomer
    replied
    Yes, user lh3 has done some analysis: http://lh3lh3.users.sourceforge.net/alnROC.shtml

    Leave a comment:


  • adaptivegenome
    started a topic Bowtie 2 versus BWA

    Bowtie 2 versus BWA

    Has anyone compared the speed of BWA and Bowtie 2? How about the accuracy for both point mutation and indels?

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