Hi,
does anyone know of a genome browser that collapse all exact reads to one read, but with a thickness or color that can reflect the number of reads for that loaction?
in other words if i have a genomic location say 1-50 that has 200 reads and another location with 3-75 with 20 reads, i would like to see a longline for 1-50 location with a very thickline (or an appropriate color), while 3-75 gets a much smaller thickness? Can UCSC do this? anyother favorites you know for bed file visulaization witht this purpose?
something like
___________________________
___________________________
___________________________ for 1-50
___________________________________ for 3-75
thanks
svm
does anyone know of a genome browser that collapse all exact reads to one read, but with a thickness or color that can reflect the number of reads for that loaction?
in other words if i have a genomic location say 1-50 that has 200 reads and another location with 3-75 with 20 reads, i would like to see a longline for 1-50 location with a very thickline (or an appropriate color), while 3-75 gets a much smaller thickness? Can UCSC do this? anyother favorites you know for bed file visulaization witht this purpose?
something like
___________________________
___________________________
___________________________ for 1-50
___________________________________ for 3-75
thanks
svm
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