Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • vinay052003
    Member
    • Jan 2010
    • 59

    #1

    FASTX quality plot error

    Hi all,
    I am using FASTX tool kit to for the quality control. When I run fastq_quality_boxplot_graph.sh script on the quality stats file, I get following two strange errors:

    line 0: undefined variable: inside

    and

    gnuplot> plot 'my_input_file' using 1:7:11:12:9 with candlesticks lt 1 lw 1 title 'Quartiles' whiskerbars, '' using 1:8:8:8:8 with candlesticks lt -1 lw 2 title 'Medians'
    ^
    line 0: ';' expected



    Any suggestions?

    Thanks.
  • teriri
    Junior Member
    • Nov 2011
    • 1

    #2
    Hi Vinay -- did you ever resolve this issue? I am encountering it as well.

    Thanks

    -T

    Comment

    • vinay052003
      Member
      • Jan 2010
      • 59

      #3
      I figured my GNU plot libraries were missing. I installed them and it worked.

      Comment

      Latest Articles

      Collapse

      • kinpict.com
        Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
        by kinpict.com
        The part about this topic feels surprisingly grounded, and the details on the page is the bit that made me slow down. I’d keep <a href="https://kinpict.com/">ai family photo generator</a> bookmarked for later.
        Today, 06:37 PM
      • SEQadmin2
        16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
        by SEQadmin2





        NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
        10-30-2026, 06:46 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 11-12-2026, 07:59 AM
      0 responses
      27 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 11-05-2026, 09:25 AM
      0 responses
      35 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 11-03-2026, 11:54 AM
      2 responses
      56 views
      0 reactions
      Last Post kinpict.com  
      Started by SEQadmin2, 10-28-2026, 09:57 AM
      0 responses
      175 views
      0 reactions
      Last Post SEQadmin2  
      Working...