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  • PRINSEQ and paired-end data

    Hi, I am using PRINSEQ to separate reads of differing GC content, however I have noticed that it doesn't deal with paired-end data.

    Is there any software that can separate reads based on GC using paired-end data?

    Thanks.

  • #2
    Hi,

    I have the same query too. Could you please let me know if you managed to find a solution ?

    Best regards,
    Ambily

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