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  • kasthuri
    Member
    • Jun 2011
    • 36

    #1

    Black line between two reads in IGV

    It will be great if somebody can enlighten me on what does a black line between two consecutive reads in IGV, represent? I am attaching a pic. I tried searching but couldn't find any info.

    Thanks
    -Kasthuri
    Attached Files
    Last edited by kasthuri; 01-12-2012, 10:42 AM. Reason: Included "consecutive"
  • swbarnes2
    Senior Member
    • May 2008
    • 910

    #2
    That's a deletion in those reads relative to the reference.

    Comment

    • kasthuri
      Member
      • Jun 2011
      • 36

      #3
      Thanks! I don't think they have this info in the IGV documentation.

      Comment

      • Jim Robinson
        Member
        • May 2009
        • 75

        #4
        You're both correct, we'll update our documentation, thanks for pointing this out. That is a single read with a deletion, not 2 reads.

        Jim

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