Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • kasthuri
    Member
    • Jun 2011
    • 36

    #1

    Black line between two reads in IGV

    It will be great if somebody can enlighten me on what does a black line between two consecutive reads in IGV, represent? I am attaching a pic. I tried searching but couldn't find any info.

    Thanks
    -Kasthuri
    Attached Files
    Last edited by kasthuri; 01-12-2012, 10:42 AM. Reason: Included "consecutive"
  • swbarnes2
    Senior Member
    • May 2008
    • 910

    #2
    That's a deletion in those reads relative to the reference.

    Comment

    • kasthuri
      Member
      • Jun 2011
      • 36

      #3
      Thanks! I don't think they have this info in the IGV documentation.

      Comment

      • Jim Robinson
        Member
        • May 2009
        • 75

        #4
        You're both correct, we'll update our documentation, thanks for pointing this out. That is a single read with a deletion, not 2 reads.

        Jim

        Comment

        Latest Articles

        Collapse

        • SEQadmin2
          Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
          by SEQadmin2



          Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

          Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
          ...
          10-14-2026, 09:55 AM
        • SEQadmin2
          New Genomics Technologies Take Aim at Long-Standing Limits
          by SEQadmin2


          Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

          We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
          ...
          09-28-2026, 10:25 AM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by SEQadmin2, Yesterday, 10:52 AM
        0 responses
        9 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 10-14-2026, 05:39 AM
        0 responses
        19 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 10-13-2026, 09:56 AM
        0 responses
        16 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 10-09-2026, 11:14 AM
        0 responses
        27 views
        0 reactions
        Last Post SEQadmin2  
        Working...