Integrating RNAseq and Proteomics

[MikeyG]

Hi All,
I'm wondering if anybody has a good recommendation for a software tool or suite that effectively integrates and correlates RNAseq and Proteomics data from the same samples? Any pertinent literature and/or approaches are also welcome...Any help here would be greatly appreciated!
Thanks!
Mike

[mudshark]

Hi Mike,
that will largely depend on whether you want a full isoform analysis or not. if not, you can simply correlate based on gene-based summarization values using e.g. R or even EXCEL.

[sphil]

Hi Mike,
that will largely depend on whether you want a full isoform analysis or not. if not, you can simply correlate based on gene-based summarization values using e.g. R or even EXCEL.

If you use EXCEL please keep in mind to change your format into the right way to pretend "excel gene name hacking"...(http://bioinformatics.fr/resources.p...rosoft%20Excel,)