BFAST Web Server for the alignment of ABI SOLiD Data

[nilshomer]

The BFAST Web Server is a user-friendly way to quickly align short reads to reference sequences in both nucleotide space as well as ABI SOLiD color space. Utilities include BFAST alignment, conversion between nucleotide and color space, calculating the a priori power of the alignments, as well as a utility to perform smith-waterman local alignment.

http://genome.ucla.edu/bfast-server/

These are demonstration servers only, see please don't hit them with millions (billions) of reads just yet. If anyone desires to set up their own local versions, please contact me and I would be happy to help.

[KevinLam]

Nice!
are you intending to write wrappers for galaxy with bfast as well?

[nilshomer]

Nice!
are you intending to write wrappers for galaxy with bfast as well?

I wrote them about a week ago and sent them off to the galaxy developers .