Unconfigured Ad

Collapse
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • nilshomer
    Nils Homer
    • Nov 2008
    • 1283
    #1

    BFAST Web Server for the alignment of ABI SOLiD Data

    The BFAST Web Server is a user-friendly way to quickly align short reads to reference sequences in both nucleotide space as well as ABI SOLiD color space. Utilities include BFAST alignment, conversion between nucleotide and color space, calculating the a priori power of the alignments, as well as a utility to perform smith-waterman local alignment.

    http://genome.ucla.edu/bfast-server/


    These are demonstration servers only, see please don't hit them with millions (billions) of reads just yet. If anyone desires to set up their own local versions, please contact me and I would be happy to help.
    Tags: bfast, sequence alignment, server
  • KevinLam
    Senior Member
    • Nov 2009
    • 204
    #2
    Nice!
    are you intending to write wrappers for galaxy with bfast as well?
    http://kevin-gattaca.blogspot.com/

    Comment

    • nilshomer
      Nils Homer
      • Nov 2008
      • 1283
      #3
      Originally posted by KevinLam View Post
      Nice!
      are you intending to write wrappers for galaxy with bfast as well?
      I wrote them about a week ago and sent them off to the galaxy developers .

      Comment

      Previous template Next

      Latest Articles

      Collapse
      • SEQadmin2
        Proteomic Platforms: How to Choose the Right Analytical Strategy to Improve Detection and Clinical Applications
        by SEQadmin2


        Proteomics platforms are evolving rapidly, with advances in mass spectrometry and affinity-based approaches expanding what researchers can detect and at what scale. As the field moves toward deeper proteome coverage and clinical applications, scientists face an increasingly complex landscape of tools. This article will explore how researchers are navigating these choices to find the right platform for their work.

        The systematic characterization of the human proteome has        ...
        07-20-2026, 11:48 AM
      • SEQadmin2
        Advanced Sequencing Platforms Tackle Neuroscience’s Toughest Genomics Problems
        by SEQadmin2



        Genomics studies in neuroscience face a special challenge due to the brain’s complexity and scarcity of samples. Mapping changes in cell type and state using conventional next-generation sequencing methods remains challenging. Advances in technologies like single-cell sequencing, spatial transcriptomics, and long-read sequencing have opened the door to deeper studies of the brain and diseases like Alzheimer’s, amyotrophic lateral sclerosis (ALS), and schizophrenia.
        ...
        07-09-2026, 11:10 AM
      • SEQadmin2
        Cancer Drug Resistance: The Lingering Barrier to Rising Survival
        by SEQadmin2



        Cancer survival rates have significantly increased in the last few decades in the United States, reaching a combined 70% 5-year survival rate by 2021. Behind this number, there are years of research to find new therapies, drug targets, and early detection methods. But there is one core challenge that keeps slowing down these advances, and it’s about drug resistance.

        There is no single reason why many patients don’t respond to treatment as expected. Cancer is...
        07-08-2026, 05:17 AM
      View All

      ad_right_rmr

      Collapse

      News

      Collapse
      Topics Statistics Last Post
      Single-Cell Atlases Skew Toward European Ancestry, Analysis Finds by SEQadmin2
      Started by SEQadmin2, 07-20-2026, 11:10 AM
      0 responses
      18 views
      0 reactions
      		 Last Post SEQadmin2
      by SEQadmin2
      07-20-2026, 11:10 AM  
      UC San Diego Bioengineers Map Gene Function in Human Stem Cells by SEQadmin2
      Started by SEQadmin2, 07-13-2026, 10:26 AM
      0 responses
      32 views
      0 reactions
      		 Last Post SEQadmin2
      by SEQadmin2
      07-13-2026, 10:26 AM  
      New Analysis Splits Leukemia Into 16 Epigenomic Subgroups by SEQadmin2
      Started by SEQadmin2, 07-09-2026, 10:04 AM
      0 responses
      43 views
      0 reactions
      		 Last Post SEQadmin2
      by SEQadmin2
      07-09-2026, 10:04 AM  
      Genome-Wide CRISPR Screen Uncovers Unlikely Psoriasis Target by SEQadmin2
      Started by SEQadmin2, 07-08-2026, 10:08 AM
      0 responses
      29 views
      0 reactions
      		 Last Post SEQadmin2
      by SEQadmin2
      07-08-2026, 10:08 AM  
      View All
      Working...