Peak annotation resorces

[chipmonk]

I have used bowtie and MACS to align and find chipseq peaks. Now I want to annotate the peak list to the genes.
I have .go and interpro annotation files. as the genome (bombyx) is not available on ucsc browser. I cannot use galaxy. many others also link to ucsc.
can anyone suggest programs that can do customized peak annotations.
I have come across ceas, cisgenome and chip-peak-anno.

please suggest if any more simple software.

thanks
harsha

[tebuffer]

Try HOMER's - annotatepeaks.pl.... it lets custom annotations to be used;

http://biowhat.ucsd.edu/homer/ngs/annotation.html

Good luck,
TEB

[chipmonk]

thanks for the suggestion. i will check homer.