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  • oxydeepu
    Member
    • Jul 2011
    • 41

    ChIP-Seq Peak Calling tools

    Hi all,

    Is there any tools to study the ChIP-Seq peak calling tools which can be used without a control sample.

    Thank you
    cheers
    deepak
  • kopi-o
    Senior Member
    • Feb 2008
    • 319

    #2
    Yes, there are many, but it's much better to have a control sample.

    Still, if you are stuck without one, you could start by looking at e.g. SISSRs or MACS.

    Comment

    • oxydeepu
      Member
      • Jul 2011
      • 41

      #3
      Thanks alot kopi-o..

      I will try using them.

      cheers
      deepak

      Comment

      • soban
        Junior Member
        • Nov 2011
        • 5

        #4
        Dear All,
        I am a learner in Bioinformatics, i am running SNP -Calling through GATK Tool kit. i have set of SNPs , which i want to locate now in my genome (Ptrichocarpa), would anybody tell me please, which tool is the best for this process.

        Comment

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