ChIP-Seq Peak Calling tools

[oxydeepu]

Hi all,

Is there any tools to study the ChIP-Seq peak calling tools which can be used without a control sample.

Thank you
cheers
deepak

[kopi-o]

Yes, there are many, but it's much better to have a control sample.

Still, if you are stuck without one, you could start by looking at e.g. SISSRs or MACS.

[oxydeepu]

Thanks alot kopi-o..

I will try using them.

cheers
deepak

[soban]

Dear All,
I am a learner in Bioinformatics, i am running SNP -Calling through GATK Tool kit. i have set of SNPs , which i want to locate now in my genome (Ptrichocarpa), would anybody tell me please, which tool is the best for this process.