cufflinks 2.0.0 source missing a header?

[jstjohn]

Has anyone had success installing the latest cufflinks (2.0.0 beta) from source? It seems like a required local header file "rounding.h" is not included in the source distribution. I have emailed their support email about this, but I just wanted to double check that I am not the only one having this issue. Thanks!

g++44 -DHAVE_CONFIG_H -I. -I..  -I../src  -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wunused -Wuninitialized -m64 -march=nocona -O3  -DNDEBUG  -pthread -I/hive/groups/genomeAssem/include -I/hive/groups/genomeAssem/src/samtools_svn/include -I/hive/groups/genomeAssem/include -MT abundances.o -MD -MP -MF .deps/abundances.Tpo -c -o abundances.o abundances.cpp
abundances.cpp:38:22: error: rounding.h: No such file or directory

The reason I think that it is a local file rather than something my system is missing is that it is included right in the middle of a block of other locally included header files, and the include statement uses the double quote syntax rather than the <> syntax. Thanks!

[sdriscoll]

Er..I didn't know there was a 2.0. I thought they were working on 1.4 still.

[kopi-o]

There is a 2.0 version as of yesterday.

[vinay052003]

Hi Kopi-o,
Did you figure out the installation problem yet? I am having another problem with the Eigen libray. I downloaded and copied the eigen-eigen-b23437e61a07/Eigen to a directory in my PATH and gave --with-eigen arguments while configuring. But the configure log still says could not find eigen libraries. Any idea?

Thanks

[vinay052003]

Hi segmagician,
Thanks for the tip. If possible, can you please provide the round.h? I am also having problem with that.
Thanks.

[GenoMax]

I corresponded with Cole earlier today about problems with the original tar file.

He has kindly provided a new source tar ball that fixed problems we were noticing. Get the latest source from the download link.

[vinay052003]

Yes... I just noticed that... the source file has been updated.

[vinay052003]

Hi,
I stills can not install Cufflinks. My make is successful but when I try to execute the cufflinks executable it gives me the following error:

error while loading shared libraries: libboost_thread.so.1.48.0: cannot open shared object file: No such file or directory

I tried installing with boost 1.49 but got the same error. Any idea?

Thanks.

[GenoMax]

Try appending the LD_LIBRARY_PATH as described here.

http://seqanswers.com/forums/showthread.php?t=14224

Hi,
I stills can not install Cufflinks. My make is successful but when I try to execute the cufflinks executable it gives me the following error:

error while loading shared libraries: libboost_thread.so.1.48.0: cannot open shared object file: No such file or directory

I tried installing with boost 1.49 but got the same error. Any idea?

Thanks.

[vinay052003]

Thank GenoMax..
for some reason I can't find libboost_thread.so.1.48.0 on my system. My boost installation was successful though. I noticed that /my_boost_install_dir/lib is empty. Is this the place where libboost_thread.so.1.48.0 supposed to be?

[GenoMax]

The file (libboost_thread.so.1.*) should be in the "lib" directory. Perhaps your boost installation did not work right.

Thank GenoMax..
for some reason I can't find libboost_thread.so.1.48.0 on my system. My boost installation was successful though. I noticed that /my_boost_install_dir/lib is empty. Is this the place where libboost_thread.so.1.48.0 supposed to be?