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  • GenoMax
    replied
    Are you interested in blasting your contigs against the preformatted "nr" database?

    If that is correct then have a look at this link: http://www.ncbi.nlm.nih.gov/books/NBK1763/

    Leave a comment:


  • Avila
    started a topic Help with Blast and nr database

    Help with Blast and nr database

    Hello.

    I have a list of contigs that I would like them Blast on my computer (BioLinux 6), my question is how to use the nr database (preformatted, nr.00.tar.gz ... nr.06.tar.gz) I decompressed tar xzvf files, creating files with extension. phd. phi. phr. pin. pnd. pni. pog. ppi. psd. psi. psq But not to do with them, I found the following with formatdb:

    "Please note that formatdb does not create non-redundant blast databases"

    That means you can run blastall as are the files or format it with another program and not formatdb?

    Thanks

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