Im trying to install BWA in a Fedora 10 64 bit machine
and I run the following commands:
I get the following error:
Any clues?
and I run the following commands:
Code:
tar xvjf bwa-0.6.1.tar.bz2 make
Code:
gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD ksw.c -o ksw.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
In file included from bwtaln.h:6,
from bwaseqio.c:4:
bwt.h:61: error: expected specifier-qualifier-list before ‘size_t’
make: *** [bwaseqio.o] Error 1
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