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  • atalon1
    Junior Member
    • May 2010
    • 3

    Fix syntax error during Roche DataAnalysis_2.7 install

    Dear all,

    Some time ago, I have been happy to find how to fix the error (this post)
    Code:
    sh: /sbin/lspci: not found
    when installating the Roche Data Analysis softwares in Ubuntu.

    This might still be useful but I got a new error during the installation of the Data Analysis 2.7 version:
    Code:
    /tmp/selfgz111829748/files_extra//installRpm.sh: 12: 
    /tmp/selfgz111829748/files_extra//installRpm.sh: Syntax error: "(" unexpected
    I share with you the way I managed to install it:

    Run the install:
    Code:
    sudo ./setup.sh
    do not proceed with the next button and leave the window opened!!

    In the the installRpm.sh file generated by the install script in your fodler:
    Code:
    /tmp/selfgxxxxxxxxxxx/files_extra/
    As root, change the header line
    Code:
    #!/bin/sh
    into
    Code:
    #!/bin/bash
    Save and close, then go on with the opened installation window. It worked for me and I hope it will help at least some of you.
  • Melissa
    Senior Member
    • Aug 2008
    • 124

    #2
    Thanks a lot! It works on Newbler 2.9.

    Here's what happened. I installed the required packages according to http://www.biongenex.com/technical-n...debian-64-bit/ and tried jvhaarst's solution on http://seqanswers.com/forums/showthread.php?t=8944. I was able to run gsAssembler, however, I can't upload SFF/FASTQ/FASTA files on the GUI!

    Something must be wrong with my initial installation. I tried "sudo ln -s /bin/true /bin/rocks". When I run setup.sh, I get an error message "could not execute command:type rocks 2>&1" and "installing jre failed". I installed Openjdk previously so there shouldn't be a problem with jre. Finally, I tried your method and it works!

    Comment

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