Fix syntax error during Roche DataAnalysis_2.7 install

[atalon1]

Dear all,

Some time ago, I have been happy to find how to fix the error (this post)

sh: /sbin/lspci: not found

when installating the Roche Data Analysis softwares in Ubuntu.

This might still be useful but I got a new error during the installation of the Data Analysis 2.7 version:

/tmp/selfgz111829748/files_extra//installRpm.sh: 12: 
/tmp/selfgz111829748/files_extra//installRpm.sh: Syntax error: "(" unexpected

I share with you the way I managed to install it:

Run the install:

sudo ./setup.sh

do not proceed with the next button and leave the window opened!!

In the the installRpm.sh file generated by the install script in your fodler:

/tmp/selfgxxxxxxxxxxx/files_extra/

As root, change the header line

#!/bin/sh

into

#!/bin/bash

Save and close, then go on with the opened installation window. It worked for me and I hope it will help at least some of you.

[Melissa]

Thanks a lot! It works on Newbler 2.9.

Here's what happened. I installed the required packages according to http://www.biongenex.com/technical-n...debian-64-bit/ and tried jvhaarst's solution on http://seqanswers.com/forums/showthread.php?t=8944. I was able to run gsAssembler, however, I can't upload SFF/FASTQ/FASTA files on the GUI!

Something must be wrong with my initial installation. I tried "sudo ln -s /bin/true /bin/rocks". When I run setup.sh, I get an error message "could not execute command:type rocks 2>&1" and "installing jre failed". I installed Openjdk previously so there shouldn't be a problem with jre. Finally, I tried your method and it works!