Hi all,
I'm working with a .bed format file of illumina reads and I don't have the original alignment file. A program I'm working with can read in bowtie, eland, maq or modified bed (see below) but not regular bed files!
Anyone have a good recommendation for ways to convert .bed to one of these file formats?
Thanks!!!
Lizzy
I'm working with a .bed format file of illumina reads and I don't have the original alignment file. A program I'm working with can read in bowtie, eland, maq or modified bed (see below) but not regular bed files!

Anyone have a good recommendation for ways to convert .bed to one of these file formats?
Thanks!!!
Lizzy
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