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  • BLAT problem

    i have download BLAT form
    http://genome-test.cse.ucsc.edu/~ken...atSuite.34.zip

    the computer : 64bit Ubuntu

    after unzip the file, when i use ./blat

    -bash: ./blat: No such file or directory

  • #2
    Originally posted by baohua100 View Post
    i have download BLAT form
    http://genome-test.cse.ucsc.edu/~ken...atSuite.34.zip

    the computer : 64bit Ubuntu

    after unzip the file, when i use ./blat

    -bash: ./blat: No such file or directory
    Have you tried seeing what exists in the directory using "ls"? I would recommend a Unix bash tutorial to familiarize yourself before proceeding.

    Comment


    • #3
      It's mode is 775 .

      -rw-rw-r-- 1 populus populus 120240 2003-09-18 21:23 11.ooc
      -rwxrwxr-x 1 populus populus 225708 2007-04-20 19:59 blat
      -rw-r--r-- 1 populus populus 829907 2007-04-20 19:58 blatSuite.34.zip
      -rwxrwxr-x 1 populus populus 95850 2007-04-20 19:59 faToNib
      -rwxrwxr-x 1 populus populus 70656 2007-04-20 19:59 faToTwoBit
      -rwxrwxr-x 1 populus populus 213404 2007-04-20 19:59 gfClient
      -rwxrwxr-x 1 populus populus 117924 2007-04-20 19:59 gfServer
      -rwxrwxr-x 1 populus populus 95932 2007-04-20 19:59 nibFrag
      -rwxrwxr-x 1 populus populus 160082 2007-04-20 19:59 pslPretty
      -rwxrwxr-x 1 populus populus 124514 2007-04-20 19:59 pslReps
      -rwxrwxr-x 1 populus populus 124243 2007-04-20 19:59 pslSort
      -rwxrwxr-x 1 populus populus 64168 2007-04-20 19:59 twoBitInfo
      -rwxrwxr-x 1 populus populus 100322 2007-04-20 19:59 twoBitToFa
      -rw-rw-r-- 1 populus populus 10384 2007-04-20 19:56 version.doc
      -rwxrwxr-x 1 populus populus 241884 2007-04-20 19:59 webBlat
      Last edited by baohua100; 08-22-2009, 07:38 PM.

      Comment


      • #4
        This is most likely due to the exe being compiled for 32bit while you are running 64bit. Download and compile the source for best results or install the lib32 libraries.
        sudo apt-get install ia32-libs
        Last edited by aaronh; 08-22-2009, 09:03 PM. Reason: add sudo

        Comment


        • #5
          Originally posted by aaronh View Post
          This is most likely due to the exe being compiled for 32bit while you are running 64bit. Download and compile the source for best results or install the lib32 libraries.
          sudo apt-get install ia32-libs
          yes, it's ok now

          Comment

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