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Hey all,
I have tried to install Maq-0.7.1 from the sourceforge website many times but I see a couple of problems. First I don't think it is configuring right. I keep getting a warning with my zlib.h. Then, it can't findgnu/stubs-64.h.
Any suggestions?
Here is the code:
steven@Home[maq-0.7.1] ./configure [ 8:28AM]
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking if gcc accepts -m64... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... no
checking for sys/types.h... no
checking for sys/stat.h... no
checking for stdlib.h... no
checking for string.h... no
checking for memory.h... no
checking for strings.h... no
checking for inttypes.h... no
checking for stdint.h... no
checking for unistd.h... no
checking zlib.h usability... no
checking zlib.h presence... yes
configure: WARNING: zlib.h: present but cannot be compiled
configure: WARNING: zlib.h: check for missing prerequisite headers?
configure: WARNING: zlib.h: see the Autoconf documentation
configure: WARNING: zlib.h: section "Present But Cannot Be Compiled"
configure: WARNING: zlib.h: proceeding with the preprocessor's result
configure: WARNING: zlib.h: in the future, the compiler will take precedence
checking for zlib.h... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: config.h is unchanged
steven@Home[maq-0.7.1] make [ 8:28AM]
make all-am
make[1]: Entering directory `/home/steven/maq-0.7.1'
gcc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -c main.c
In file included from /usr/include/features.h:354,
from /usr/include/stdio.h:28,
from main.c:1:
/usr/include/gnu/stubs.h:9:27: error: gnu/stubs-64.h: No such file or directory
make[1]: *** [main.o] Error 1
make[1]: Leaving directory `/home/steven/maq-0.7.1'
make: *** [all] Error 2
steven@Home[maq-0.7.1] make install [ 8:30AM]
gcc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -c main.c
In file included from /usr/include/features.h:354,
from /usr/include/stdio.h:28,
from main.c:1:
/usr/include/gnu/stubs.h:9:27: error: gnu/stubs-64.h: No such file or directory
make: *** [main.o] Error 1
I have tried to install Maq-0.7.1 from the sourceforge website many times but I see a couple of problems. First I don't think it is configuring right. I keep getting a warning with my zlib.h. Then, it can't findgnu/stubs-64.h.
Any suggestions?
Here is the code:
steven@Home[maq-0.7.1] ./configure [ 8:28AM]
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking if gcc accepts -m64... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... no
checking for sys/types.h... no
checking for sys/stat.h... no
checking for stdlib.h... no
checking for string.h... no
checking for memory.h... no
checking for strings.h... no
checking for inttypes.h... no
checking for stdint.h... no
checking for unistd.h... no
checking zlib.h usability... no
checking zlib.h presence... yes
configure: WARNING: zlib.h: present but cannot be compiled
configure: WARNING: zlib.h: check for missing prerequisite headers?
configure: WARNING: zlib.h: see the Autoconf documentation
configure: WARNING: zlib.h: section "Present But Cannot Be Compiled"
configure: WARNING: zlib.h: proceeding with the preprocessor's result
configure: WARNING: zlib.h: in the future, the compiler will take precedence
checking for zlib.h... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: config.h is unchanged
steven@Home[maq-0.7.1] make [ 8:28AM]
make all-am
make[1]: Entering directory `/home/steven/maq-0.7.1'
gcc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -c main.c
In file included from /usr/include/features.h:354,
from /usr/include/stdio.h:28,
from main.c:1:
/usr/include/gnu/stubs.h:9:27: error: gnu/stubs-64.h: No such file or directory
make[1]: *** [main.o] Error 1
make[1]: Leaving directory `/home/steven/maq-0.7.1'
make: *** [all] Error 2
steven@Home[maq-0.7.1] make install [ 8:30AM]
gcc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -c main.c
In file included from /usr/include/features.h:354,
from /usr/include/stdio.h:28,
from main.c:1:
/usr/include/gnu/stubs.h:9:27: error: gnu/stubs-64.h: No such file or directory
make: *** [main.o] Error 1
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