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  • BreakDancer problems

    Does anyone ever use BreakDancer to detect GSV?

    I downloaded it from http://genome.wustl.edu/tools/cancer-genomics, but I found I can't run it successfully, I don't know if I use correct command, does
    anyone successfully apply BreakDancer on PE libs? Would you please provide me some examples?

    thanks

  • #2
    You can find it here

    Comment


    • #3
      Could you post your feedback and comments on using the tool?
      --
      bioinfosm

      Comment


      • #4
        Originally posted by bioinfosm View Post
        Could you post your feedback and comments on using the tool?
        I am still running the program, the tool is very easy to use, but I may have questions during the running, I will track this thread to post all problems I meet.

        Comment


        • #5
          After decompressing, there is only one file named "BreakDancer.release-0.0.1r56",and how to use ?
          I find that the file is a combination of several perl scripts,but i don't know how to use it.

          Comment


          • #6
            Hi,
            I have problems in installing breakdancer.
            I downloaded the zip file from sourceforce and decompressed it.
            I found two suddirectories, perl and cpp.
            I try to make in cpp directory but I'm not able to compile breakdancer.
            Could anyone help me for this issue?
            Thanks

            Comment

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