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  • totalnew
    Member
    • Apr 2009
    • 46

    BreakDancer problems

    Does anyone ever use BreakDancer to detect GSV?

    I downloaded it from http://genome.wustl.edu/tools/cancer-genomics, but I found I can't run it successfully, I don't know if I use correct command, does
    anyone successfully apply BreakDancer on PE libs? Would you please provide me some examples?

    thanks
  • pickw
    Junior Member
    • Aug 2009
    • 5

    #2
    You can find it here

    Comment

    • bioinfosm
      Senior Member
      • Jan 2008
      • 483

      #3
      Could you post your feedback and comments on using the tool?
      --
      bioinfosm

      Comment

      • totalnew
        Member
        • Apr 2009
        • 46

        #4
        Originally posted by bioinfosm View Post
        Could you post your feedback and comments on using the tool?
        I am still running the program, the tool is very easy to use, but I may have questions during the running, I will track this thread to post all problems I meet.

        Comment

        • jfshao1984
          Junior Member
          • Mar 2008
          • 5

          #5
          After decompressing, there is only one file named "BreakDancer.release-0.0.1r56",and how to use ?
          I find that the file is a combination of several perl scripts,but i don't know how to use it.

          Comment

          • simobioinfo
            Member
            • Aug 2014
            • 40

            #6
            Hi,
            I have problems in installing breakdancer.
            I downloaded the zip file from sourceforce and decompressed it.
            I found two suddirectories, perl and cpp.
            I try to make in cpp directory but I'm not able to compile breakdancer.
            Could anyone help me for this issue?
            Thanks

            Comment

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