Hi everyone,
I want to use DESeq for rna-seq analysis. I was trying to work out with the trial data when I ran into problem. I wanted to go for DE after estimating the dispersion with the estimateDispersion function. When I do the nbionomTest I get following error,
Error in nbinomTest(cds, "untreated", "treated") :
For CountDataSets with multivariate conditions, only the GLM-based test can be used.
Why is this happening?
Thanks in advance.
I want to use DESeq for rna-seq analysis. I was trying to work out with the trial data when I ran into problem. I wanted to go for DE after estimating the dispersion with the estimateDispersion function. When I do the nbionomTest I get following error,
Error in nbinomTest(cds, "untreated", "treated") :
For CountDataSets with multivariate conditions, only the GLM-based test can be used.
Why is this happening?
Thanks in advance.
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