Can anyone recommend some reliable software for CNV detection in cancer cells for Illumina WGS data?
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Hi
I am the developer of CNAnorm which is designed for normalisation, segmentation, GC correction and plotting of copy number data from very low coverage (~ 0.05X) whole genome sequencing. It also works with higher coverage (obviously takes more time and you will need a few tweeks) and some report using it sucesfully on exome capture data.
Please read this post where other users posted their questions and I provided some suggestions.
good luck -
Hi, stefanoberri, I am not able to access the paper for CNAnorm, could you mind to send me the paper in mailbox: [email protected]? I appreciate it !Comment
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Hi, sorry for the late reply.
Here you can find the preprint of the article and the supplemental materialLast edited by stefanoberri; 08-15-2012, 08:47 AM.Comment
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