Classify Bacterial and Archaeal fragments from 454-Metagenome

[Mithril]

Hello all,
I have just started working with 454 metagenome datasets and was wondering if there is any tool that can classify reads from 454 into bacterial or archaeal sequences?

I have come across many tools that do something similar only for 16s rRNA.

Using a training dataset and word based classifier, can one divide the metagenome dataset into bacterial and archaeal sequences?

Thank you for your time!!

[severin]

MGRast

Have you looked into MGRAST? It is a free webserver with lots of functionality.

[Mithril]

Thank you for you suggestion.

Yes, I have. I would really like something that has a lot of standalone capacity instead of a webserver....

[jimmybee]

MetaPhlAn (http://huttenhower.sph.harvard.edu/metaphlan/)

[Mithril]

Thank you jimmybee! MetaPhlAn looks good.

Any more recommendations?

Once again, thank you for all your solutions.