Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • MCAE
    Junior Member
    • Aug 2012
    • 7

    #1

    Basic data from metagenome

    Hi Everyone,
    i'm new in the 'Bioinformatics world? and i really appreciate if someone can help me to get the basic information from a metagenome (numer of reads, read length, coverga...etc etc)
    Rigth now, i started with some analysis on MetaVelvet, but I really don't know where I'm, and, for the moment, i don't have anybody for asking...
    Please!!!

    greetings....
    MCAE_2012
  • colindaven
    Senior Member
    • Oct 2008
    • 417

    #2
    It would be helpful if you mentioned what data type you have at the very least !

    Comment

    • MCAE
      Junior Member
      • Aug 2012
      • 7

      #3
      Hi
      my data is a Metagenome from 454 FLX, the only thing I know is how many reads I've...
      Thanks!!
      MCAE_2012

      Comment

      • colindaven
        Senior Member
        • Oct 2008
        • 417

        #4
        Still not too helpful - is it a whole genome shotgun metagenome ?

        Try MG-RAST for a start.
        http://metagenomics.anl.gov/

        Alternatively try a BLAST alignment and then use MEGAN.

        Or if it's 16S rDNA (?)

        Try QIIME.

        Comment

        Latest Articles

        Collapse

        • SEQadmin2
          Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
          by SEQadmin2



          Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

          Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
          ...
          10-14-2026, 09:55 AM
        • SEQadmin2
          New Genomics Technologies Take Aim at Long-Standing Limits
          by SEQadmin2


          Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

          We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
          ...
          09-28-2026, 10:25 AM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by SEQadmin2, Yesterday, 11:13 AM
        0 responses
        16 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, Yesterday, 10:48 AM
        0 responses
        15 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 10-15-2026, 10:52 AM
        0 responses
        35 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 10-14-2026, 05:39 AM
        0 responses
        42 views
        0 reactions
        Last Post SEQadmin2  
        Working...