Hi,
By checking previous posts in the forum, I understand now there is difference in quality score scaling before and after GApipeline 1.3. Thanks very much to authors of those posts and the author of the wikipedia page of fastq.
I got some fastq data from others recently. But they did not tell me whether these data were generated by 1.3+ or previous pipelines. How can I tell just from the content of data file whether these fastq data are from GApipeline 1.3+ or not?
The data looks like as follows:
@7_xQRfTHiJ321/1
CTCTGAAGCTGCGTTTACTTATGTTGATATCTACTCTATCAAGCTTACTCTCATCACTCAAGCCAAGAAACTCGG
+
a`aaaZ^`^aaaa_aa`aaaa``^_a]`aa`a_`aa`\`a`Y`^_a`_a_aaa`a``_``_aZ]\Xa_[__][\[
@5_SPRfTHiJ321/1
TTTGGCTTTGTGTCTTTTAACAAGGAAACACTAATTAGGCTTATAAGATGCGGTTGCGGTTTAAGTCCTTATACT
+
aababaabaa_aa\aaaa^aa`aaa``a\_[a^]aa`aa_aa_aY^__`aXaa]``S`aV[YJVYOOTY_U\OJV
Thank you very much!
By checking previous posts in the forum, I understand now there is difference in quality score scaling before and after GApipeline 1.3. Thanks very much to authors of those posts and the author of the wikipedia page of fastq.
I got some fastq data from others recently. But they did not tell me whether these data were generated by 1.3+ or previous pipelines. How can I tell just from the content of data file whether these fastq data are from GApipeline 1.3+ or not?
The data looks like as follows:
@7_xQRfTHiJ321/1
CTCTGAAGCTGCGTTTACTTATGTTGATATCTACTCTATCAAGCTTACTCTCATCACTCAAGCCAAGAAACTCGG
+
a`aaaZ^`^aaaa_aa`aaaa``^_a]`aa`a_`aa`\`a`Y`^_a`_a_aaa`a``_``_aZ]\Xa_[__][\[
@5_SPRfTHiJ321/1
TTTGGCTTTGTGTCTTTTAACAAGGAAACACTAATTAGGCTTATAAGATGCGGTTGCGGTTTAAGTCCTTATACT
+
aababaabaa_aa\aaaa^aa`aaa``a\_[a^]aa`aa_aa_aY^__`aXaa]``S`aV[YJVYOOTY_U\OJV
Thank you very much!
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