I used GATK DepthOf Coverage but got ">500" for 'sample_granular_Q3'. I wonder if there is any parameter to change this limit.
Thanks!
Thanks!
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I remember using something like -dt NONE for this issue. -
Thanks. I will try that. The reason I ask this is that I have a very deep sequenced data set and I am applying ExomeCNV on them. However, it gives "invalid factor level, NAs generated" error when reading into the coverages. I guess it is caused by the non-numerical items such as ">500".Comment
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