Unconfigured Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • gfacm
    Junior Member
    • Jan 2013
    • 2

    gsMapper internal error (exit status 256)

    Hi,

    I used gsMapper with a fasta file as reference and fasq data to map.
    At "generating output" step, I got this error message : an internal error (exit status 256) has occured in the computation.
    Please could you help me to know what it means ? thanks a lot
  • yaximik
    Senior Member
    • Apr 2011
    • 199

    #2
    gsMapper 2.7 is buggy, 454 LS could not fix the problems for 6 mo and I had to drop back to 2.5p1

    Comment

    • flxlex
      Moderator
      • Nov 2008
      • 412

      #3
      Whatever version of newbler, such an error basically means 'sorry, a bug was encountered'. You can try again, try again using slightly different settings/dataset, try again using a different version of newbler. You may contact your FAS and report the problem, but I've not heard many success stories there (exceptions do happen).

      Comment

      • gfacm
        Junior Member
        • Jan 2013
        • 2

        #4
        Thanks for your reply

        Comment

        Latest Articles

        Collapse

        • SEQadmin2
          From Collection to Sequencing: Why Sample Preparation and Preservation Define Sequencing Data
          by SEQadmin2


          Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.


          The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
          ...
          Yesterday, 10:05 AM
        • SEQadmin2
          Single-Cell Sequencing at an Inflection Point: Early Impacts of New Platforms and Emerging Trends
          by SEQadmin2


          With the launch of new single-cell sequencing platforms in 2026, the field stands at an exciting inflection point. This article surveys the most impactful advances in the field and discusses how they’re reshaping research in cancer, immunology, and beyond.


          Introduction

          Single-cell sequencing technologies have undergone remarkable advances over the past decade, transitioning from low-throughput experimental approaches to highly scalable platforms capable of...
          05-22-2026, 06:42 AM
        • SEQadmin2
          Environmental Genomics in the Age of NGS: From Microbes to Conservation Strategies
          by SEQadmin2

          Studying ecosystems means dealing with complex, multi-species communities that are hard to observe at scale. This complexity, however, hides many important questions to be answered, from how biogeochemical cycles work and how climate change can affect species distribution to how conservation strategies can work best.


          Genomics, particularly since the expansion of NGS, has transformed ecosystem ecology. By sequencing environmental DNA, we can now assess biodiversity without direct...
          05-06-2026, 09:04 AM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by SEQadmin2, Yesterday, 12:03 PM
        0 responses
        19 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, Yesterday, 11:40 AM
        0 responses
        14 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 05-28-2026, 11:40 AM
        0 responses
        29 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 05-26-2026, 10:12 AM
        0 responses
        31 views
        0 reactions
        Last Post SEQadmin2  
        Working...