hi,
we can open indexed bam file with:
File bam, index,
SAMFileReader reader = new SAMFileReader(bam, index);
or
SAMFileReader reader = new SAMFileReader(bam);
but after
reader.close();
bam file is closed but index file still open. I tested to delete the XXX.bam or xxx.bai.
how to close index file (xxx.bai)?
jay
we can open indexed bam file with:
File bam, index,
SAMFileReader reader = new SAMFileReader(bam, index);
or
SAMFileReader reader = new SAMFileReader(bam);
but after
reader.close();
bam file is closed but index file still open. I tested to delete the XXX.bam or xxx.bai.
how to close index file (xxx.bai)?
jay